Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010553.1 Corchorus olitorius cultivar O-4 contig10585, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1335
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40


Found at i:732 original size:11 final size:11

Alignment explanation


    Indices: 718--742  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        708 CATAATATTA

                       
        718 TTTCATAATAG
          1 TTTCATAATAG

                       
        729 TTTCATAATAG
          1 TTTCATAATAG

               
        740 TTT
          1 TTT

        743 ATGTAGTATA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52


Consensus pattern (11 bp):   
TTTCATAATAG
Done.