Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010557.1 Corchorus olitorius cultivar O-4 contig10589, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2422
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:803 original size:16 final size:17

Alignment explanation


    Indices: 777--808  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

        767 AGTGCAAATT

                             
        777 AAAATAGAAAAATAAAG
          1 AAAATAGAAAAATAAAG

                            
        794 AAAA-AGAAAAATAAA
          1 AAAATAGAAAAATAAA

        809 ACGCAATTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09


Consensus pattern (17 bp):   
AAAATAGAAAAATAAAG

Found at i:1041 original size:12 final size:13

Alignment explanation


    Indices: 1019--1048  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       1009 ACTAACAATT

                         
       1019 AAAATCAATCAAG
          1 AAAATCAATCAAG

                         
       1032 AAAA-CAATCAAG
          1 AAAATCAATCAAG

                 
       1044 AAAAT
          1 AAAAT

       1049 TAAAGAAAAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13


Consensus pattern (13 bp):   
AAAATCAATCAAG
Done.