Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010559.1 Corchorus olitorius cultivar O-4 contig10591, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 957

Length: 1595
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28


Found at i:407 original size:21 final size:21

Alignment explanation


    Indices: 359--401  Score: 63
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        349 AATTTTTAAG

                                 
        359 TAAAAATATAATATATATAAA
          1 TAAAAATATAATATATATAAA

                   *             
        380 TAAAAATCTAATAT-TA-AAA
          1 TAAAAATATAATATATATAAA

               
        399 TAA
          1 TAA

        402 TTAAATAGTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19    6  0.29
  20    2  0.10
  21   13  0.62

ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33


Consensus pattern (21 bp):   
TAAAAATATAATATATATAAA

Found at i:1507 original size:15 final size:15

Alignment explanation


    Indices: 1487--1516  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1477 ATCAGGCTGC

                      *    
       1487 CACGATACACGATAT
          1 CACGATACACAATAT

                           
       1502 CACGATACACAATAT
          1 CACGATACACAATAT

       1517 TTCAACCGTA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20


Consensus pattern (15 bp):   
CACGATACACAATAT
Done.