Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010566.1 Corchorus olitorius cultivar O-4 contig10598, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1686
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27


Found at i:1296 original size:21 final size:21

Alignment explanation


    Indices: 1252--1319  Score: 73
    Period size: 21  Copynumber: 3.2  Consensus size: 21

       1242 CCACTACCAA

                 *        **      
       1252 GCCACAACCGGCCATTCACCGT
          1 GCCACCACCGGCCAAGC-CCGT

                       **        
       1274 GCCACCACCGGTTAAGCCCGT
          1 GCCACCACCGGCCAAGCCCGT

                          *      
       1295 GCCACCACCGGCCATGCCCGT
          1 GCCACCACCGGCCAAGCCCGT

                
       1316 GCCA
          1 GCCA

       1320 TCATTCAGTG


Statistics
Matches: 38,  Mismatches: 8, Indels: 1
        0.81            0.17        0.02

Matches are distributed among these distances:
  21   26  0.68
  22   12  0.32

ACGTcount: A:0.19, C:0.47, G:0.22, T:0.12


Consensus pattern (21 bp):   
GCCACCACCGGCCAAGCCCGT
Done.