Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010569.1 Corchorus olitorius cultivar O-4 contig10601, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3288
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29


Found at i:773 original size:3 final size:3

Alignment explanation


    Indices: 765--821  Score: 105
    Period size: 3  Copynumber: 19.0  Consensus size: 3

        755 TCATATATAT

                                                                  *        
        765 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

                       
        813 ATA ATA ATA
          1 ATA ATA ATA

        822 TTATTATTAT


Statistics
Matches: 52,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   52  1.00

ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33


Consensus pattern (3 bp):   
ATA

Done.