Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010584.1 Corchorus olitorius cultivar O-4 contig10616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2245
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32


Found at i:1791 original size:19 final size:18

Alignment explanation


    Indices: 1754--1792  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 18

       1744 CTCCTCTATC

                     *        
       1754 ATGAAAACACTTCTTTTT
          1 ATGAAAACAATTCTTTTT

                         *     
       1772 ATGAAAACAAATTTTTTTT
          1 ATGAAAAC-AATTCTTTTT

              
       1791 AT
          1 AT

       1793 TACCCTTTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  18    8  0.44
  19   10  0.56

ACGTcount: A:0.38, C:0.10, G:0.05, T:0.46


Consensus pattern (18 bp):   
ATGAAAACAATTCTTTTT

Found at i:2116 original size:21 final size:21

Alignment explanation


    Indices: 2092--2136  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       2082 TTTTCAAACC

                    *            
       2092 TTTTGATTGCAAAAATCAATT
          1 TTTTGATTCCAAAAATCAATT

                **    *          
       2113 TTTTTTTTCCGAAAATCAATT
          1 TTTTGATTCCAAAAATCAATT

               
       2134 TTT
          1 TTT

       2137 CAAAAATTTG


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51


Consensus pattern (21 bp):   
TTTTGATTCCAAAAATCAATT
Done.