Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010586.1 Corchorus olitorius cultivar O-4 contig10618, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3224
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32


Found at i:2939 original size:24 final size:24

Alignment explanation


    Indices: 2894--2941  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2884 TTACTTTATT

                             *      
       2894 TTCTTCAAACTTCAAAATTTTCAA
          1 TTCTTCAAACTTCAAAACTTTCAA

                     *               
       2918 TTCTCTCAACCTTC-AAACTTTCAA
          1 TTCT-TCAAACTTCAAAACTTTCAA

       2942 AACTCAATCA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24   13  0.62
  25    8  0.38

ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40


Consensus pattern (24 bp):   
TTCTTCAAACTTCAAAACTTTCAA
Done.