Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001059.1 Corchorus olitorius cultivar O-4 contig01059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3935
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31


Found at i:1054 original size:13 final size:13

Alignment explanation


    Indices: 1036--1070  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       1026 GAATATATTC

                    *    
       1036 AATCAAATTTTCA
          1 AATCAAATCTTCA

                         
       1049 AATCAAATCTTCA
          1 AATCAAATCTTCA

                     
       1062 AATCAAATC
          1 AATCAAATC

       1071 AAGCCCTTAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31


Consensus pattern (13 bp):   
AATCAAATCTTCA

Found at i:1889 original size:32 final size:31

Alignment explanation


    Indices: 1849--1908  Score: 79
    Period size: 32  Copynumber: 1.9  Consensus size: 31

       1839 TAATTTTTTA

                                             
       1849 ATATTTAATATTAAATAA-TA-ATTATATACCC
          1 ATATTTAAT-TT-AATAAGTATATTATATACCC

                                         
       1880 ATATATTAATTTAATAAGTATATTATATA
          1 ATAT-TTAATTTAATAAGTATATTATATA

       1909 AATAAAAATA


Statistics
Matches: 26,  Mismatches: 0, Indels: 5
        0.84            0.00        0.16

Matches are distributed among these distances:
  30    5  0.19
  31    8  0.31
  32   13  0.50

ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45


Consensus pattern (31 bp):   
ATATTTAATTTAATAAGTATATTATATACCC
Done.