Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010590.1 Corchorus olitorius cultivar O-4 contig10622, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3515
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36


Found at i:2476 original size:16 final size:17

Alignment explanation


    Indices: 2454--2495  Score: 66
    Period size: 19  Copynumber: 2.4  Consensus size: 17

       2444 AGTGCTTTTT

                             
       2454 TTTTTCATTTTTTCTTC
          1 TTTTTCATTTTTTCTTC

                               
       2471 TTTTCATCATTTTTTCTTC
          1 TTTT--TCATTTTTTCTTC

                  
       2490 TTTTTC
          1 TTTTTC

       2496 TTAGGGGAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  17    6  0.26
  19   17  0.74

ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74


Consensus pattern (17 bp):   
TTTTTCATTTTTTCTTC
Done.