Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010593.1 Corchorus olitorius cultivar O-4 contig10625, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2173
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21


Found at i:1071 original size:44 final size:44

Alignment explanation


    Indices: 1010--1220  Score: 295
    Period size: 44  Copynumber: 4.9  Consensus size: 44

       1000 CCAATAACCA

                   *                                    
       1010 AAAAGTCGCCAAACACATATATAACACAGGGGCATTTCTATTCC
          1 AAAAGTCCCCAAACACATATATAACACAGGGGCATTTCTATTCC

                    *                *   *           *  
       1054 AAAAGTCCTCAAACACATATATAACGCAGAGGCA--TCTATACC
          1 AAAAGTCCCCAAACACATATATAACACAGGGGCATTTCTATTCC

             *                                *       * 
       1096 -CAAGTCCCCAAACACATATATAACACAGGGGCAATTCTATTAC
          1 AAAAGTCCCCAAACACATATATAACACAGGGGCATTTCTATTCC

                                                        
       1139 -AAAGTCCCCAAACACATATATAACACAGGGGCATTTCTATTCC
          1 AAAAGTCCCCAAACACATATATAACACAGGGGCATTTCTATTCC

                    **                   *         
       1182 AAAAGTCCTTAAACACATATATAACACAGAGGCATTTCT
          1 AAAAGTCCCCAAACACATATATAACACAGGGGCATTTCT

       1221 CCTTATGGCA


Statistics
Matches: 147,  Mismatches: 17, Indels: 6
        0.86            0.10        0.04

Matches are distributed among these distances:
  41   29  0.20
  42    7  0.05
  43   46  0.31
  44   65  0.44

ACGTcount: A:0.40, C:0.26, G:0.12, T:0.22


Consensus pattern (44 bp):   
AAAAGTCCCCAAACACATATATAACACAGGGGCATTTCTATTCC

Done.