Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000106.1 Corchorus olitorius cultivar O-4 contig00106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2628
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:2120 original size:25 final size:25

Alignment explanation


    Indices: 2077--2127  Score: 61
    Period size: 27  Copynumber: 2.0  Consensus size: 25

       2067 TGATAAATTT

                                       
       2077 TTATATATAATTATGATTTCTCAAAAA
          1 TTATATATAATTATGATTT-T-AAAAA

                  *                  
       2104 TTATATGT-ATTAT-ATTTTAAAAA
          1 TTATATATAATTATGATTTTAAAAA

             
       2127 T
          1 T

       2128 AATGTGGAGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 4
        0.82            0.04        0.14

Matches are distributed among these distances:
  23    6  0.26
  24    1  0.04
  25    4  0.17
  26    5  0.22
  27    7  0.30

ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49


Consensus pattern (25 bp):   
TTATATATAATTATGATTTTAAAAA
Done.