Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010601.1 Corchorus olitorius cultivar O-4 contig10633, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3559
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:827 original size:21 final size:21

Alignment explanation


    Indices: 780--834  Score: 74
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        770 GGCTTGGAAT

                *                
        780 GGTGATGGCACGGGCATAACC
          1 GGTGGTGGCACGGGCATAACC

                           *     
        801 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCACGGGCATAACC

             *     *     
        822 GTTGGTGTCACGG
          1 GGTGGTGGCACGG

        835 TGAATGGCCG


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.16, C:0.22, G:0.42, T:0.20


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC

Done.