Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001061.1 Corchorus olitorius cultivar O-4 contig01061, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29


Found at i:70 original size:11 final size:11

Alignment explanation


    Indices: 54--85  Score: 55
    Period size: 11  Copynumber: 2.9  Consensus size: 11

         44 AATGAATAAT

                       
         54 CAATCCAAAAA
          1 CAATCCAAAAA

                       
         65 CAATCCAAAAA
          1 CAATCCAAAAA

            *         
         76 TAATCCAAAA
          1 CAATCCAAAA

         86 CAAACAATTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12


Consensus pattern (11 bp):   
CAATCCAAAAA
Done.