Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010613.1 Corchorus olitorius cultivar O-4 contig10645, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3350
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33


Found at i:2750 original size:51 final size:50

Alignment explanation


    Indices: 2628--2802  Score: 226
    Period size: 51  Copynumber: 3.5  Consensus size: 50

       2618 CAGGTTTAAG

                                          **              **  
       2628 TTTTCAAATTGGGAAAGTTCCCATCAGTTTTTAAGTATTCAATTTAAAT-
          1 TTTTCAAATTGGGAAAGTTCCCATCAGTTTCAAAGTATTCAATTTAGCTC

                   * *                               *         
       2677 TTTTCAAGTCGGGAAAGTTCCCATCAGTCTTCAAAGTATTCGATTTAGCTC
          1 TTTTCAAATTGGGAAAGTTCCCATCAGT-TTCAAAGTATTCAATTTAGCTC

                   *         *                          *      
       2728 TTTTCAACTTGGGAAAGCTCCCATCAGTTTTCAAAGTATTCAATCTAGCTC
          1 TTTTCAAATTGGGAAAGTTCCCATCAG-TTTCAAAGTATTCAATTTAGCTC

                                    
       2779 TTTTGCAAATTGGGAAAGTTCCCA
          1 TTTT-CAAATTGGGAAAGTTCCCA

       2803 CCAGGTTTTA


Statistics
Matches: 108,  Mismatches: 14, Indels: 5
        0.85            0.11        0.04

Matches are distributed among these distances:
  49   26  0.24
  50   16  0.15
  51   48  0.44
  52   18  0.17

ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37


Consensus pattern (50 bp):   
TTTTCAAATTGGGAAAGTTCCCATCAGTTTCAAAGTATTCAATTTAGCTC
Done.