Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010625.1 Corchorus olitorius cultivar O-4 contig10657, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 977

Length: 1629
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27


Found at i:945 original size:10 final size:10

Alignment explanation


    Indices: 916--953  Score: 51
    Period size: 10  Copynumber: 3.9  Consensus size: 10

        906 AGTAAAACAT

                      
        916 TAAAAC-AAA
          1 TAAAACAAAA

            *         
        925 CAAAACAAAA
          1 TAAAACAAAA

                *     
        935 TAAACCAAAA
          1 TAAAACAAAA

                     
        945 TAAAACAAA
          1 TAAAACAAA

        954 GCAGCCATTT


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
   9    5  0.21
  10   19  0.79

ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08


Consensus pattern (10 bp):   
TAAAACAAAA
Done.