Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010627.1 Corchorus olitorius cultivar O-4 contig10659, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2561
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:1329 original size:21 final size:21

Alignment explanation


    Indices: 1286--1336  Score: 59
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1276 GTGACACTGC

                *     *          
       1286 CCACCTGGGTTCTCAAGCAAA
          1 CCACGTGGGTGCTCAAGCAAA

                                  
       1307 CCACGTGGGTGCTCAAGGC-AA
          1 CCACGTGGGTGCTCAA-GCAAA

               *     
       1328 CCATGTGGG
          1 CCACGTGGG

       1337 CGCCCAGGTG


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  21   24  0.92
  22    2  0.08

ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18


Consensus pattern (21 bp):   
CCACGTGGGTGCTCAAGCAAA
Done.