Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010629.1 Corchorus olitorius cultivar O-4 contig10661, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2917
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30


Found at i:255 original size:35 final size:35

Alignment explanation


    Indices: 209--280  Score: 135
    Period size: 35  Copynumber: 2.1  Consensus size: 35

        199 CTGTGAGACT

                                   *           
        209 AAGTGAAAAAACTTTGTTCATAATGAGACTAAGCG
          1 AAGTGAAAAAACTTTGTTCATAACGAGACTAAGCG

                                               
        244 AAGTGAAAAAACTTTGTTCATAACGAGACTAAGCG
          1 AAGTGAAAAAACTTTGTTCATAACGAGACTAAGCG

              
        279 AA
          1 AA

        281 ATGTAAGCAT


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  35   36  1.00

ACGTcount: A:0.44, C:0.12, G:0.19, T:0.24


Consensus pattern (35 bp):   
AAGTGAAAAAACTTTGTTCATAACGAGACTAAGCG
Done.