Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010637.1 Corchorus olitorius cultivar O-4 contig10669, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3490
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:649 original size:16 final size:16

Alignment explanation


    Indices: 624--655  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        614 ATCTTGATTT

                 *          
        624 TTTAGGGCTTTTCTGC
          1 TTTAGAGCTTTTCTGC

                            
        640 TTTAGAGCTTTTCTGC
          1 TTTAGAGCTTTTCTGC

        656 CTTGTAGAGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.09, C:0.19, G:0.22, T:0.50


Consensus pattern (16 bp):   
TTTAGAGCTTTTCTGC
Done.