Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010639.1 Corchorus olitorius cultivar O-4 contig10671, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2256
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38


Found at i:966 original size:50 final size:50

Alignment explanation


    Indices: 890--989  Score: 173
    Period size: 50  Copynumber: 2.0  Consensus size: 50

        880 ATGTAAAATT

                          *                                   
        890 GGCTCCCCCAATCAGTAAAAAATTAACCATGTTAATTTGAATATCTTAGA
          1 GGCTCCCCCAATCAATAAAAAATTAACCATGTTAATTTGAATATCTTAGA

                            *    *                            
        940 GGCTCCCCCAATCAATCAAAATTTAACCATGTTAATTTGAATATCTTAGA
          1 GGCTCCCCCAATCAATAAAAAATTAACCATGTTAATTTGAATATCTTAGA

        990 AGTAGACTTA


Statistics
Matches: 47,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  50   47  1.00

ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31


Consensus pattern (50 bp):   
GGCTCCCCCAATCAATAAAAAATTAACCATGTTAATTTGAATATCTTAGA
Done.