Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010641.1 Corchorus olitorius cultivar O-4 contig10673, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3994
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36


Found at i:2399 original size:84 final size:84

Alignment explanation


    Indices: 2283--2453  Score: 249
    Period size: 84  Copynumber: 2.0  Consensus size: 84

       2273 TCTATTTTTA

                                                                             
       2283 TTTAATAAATCTAATTCTTCATAACTACTTTATTTTTACCA-TTTTACTATTTTAATTAAAAAAA
          1 TTTAATAAATCTAATTCTTCATAACTACTTTATTTTTACCATTTTTACTATTTTAA-TAAAAAAA

                                
       2347 CTTA-A-ATATATTATAATT
         65 CTTAGACATATATTATAATT

                                 *       *                             * * * 
       2365 TTTAATTAAATCTAATATCTTTATAACTATTTTATTTTTACCATTTTTACTATTTTAATCACATA
          1 TTTAA-TAAATCTAAT-TCTTCATAACTACTTTATTTTTACCATTTTTACTATTTTAATAAAAAA

                                 
       2430 ACTTAGACATATATTATAATT
         64 ACTTAGACATATATTATAATT

               
       2451 TTT
          1 TTT

       2454 TAAATATATT


Statistics
Matches: 79,  Mismatches: 5, Indels: 6
        0.88            0.06        0.07

Matches are distributed among these distances:
  82    5  0.06
  83   10  0.13
  84   33  0.42
  85   15  0.19
  86   16  0.20

ACGTcount: A:0.37, C:0.11, G:0.01, T:0.51


Consensus pattern (84 bp):   
TTTAATAAATCTAATTCTTCATAACTACTTTATTTTTACCATTTTTACTATTTTAATAAAAAAAC
TTAGACATATATTATAATT
Done.