Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010643.1 Corchorus olitorius cultivar O-4 contig10675, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2532
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:21 original size:2 final size:2

Alignment explanation


    Indices: 16--71  Score: 96
    Period size: 2  Copynumber: 28.5  Consensus size: 2

          6 ACACACACAC

                                                          *               
         16 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                                  
         58 AT AT AT AT AT -T AT A
          1 AT AT AT AT AT AT AT A

         72 ATTAGGCCCT


Statistics
Matches: 51,  Mismatches: 2, Indels: 2
        0.93            0.04        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   50  0.98

ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.