Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010645.1 Corchorus olitorius cultivar O-4 contig10677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3365
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:2258 original size:29 final size:29

Alignment explanation


    Indices: 2225--2282  Score: 82
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       2215 TGGAGATTCG

                   *                      
       2225 AAATTCGTG-TTTGAAGACCATTTGAAGAT
          1 AAATTCGAGATTTGAAGACCA-TTGAAGAT

                 *                       
       2254 AAATTGGAGATTTGAAGACCATTGAAGAT
          1 AAATTCGAGATTTGAAGACCATTGAAGAT

       2283 TTATTTCAAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  29   15  0.58
  30   11  0.42

ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31


Consensus pattern (29 bp):   
AAATTCGAGATTTGAAGACCATTGAAGAT
Done.