Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010647.1 Corchorus olitorius cultivar O-4 contig10679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 852

Length: 1421
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24


Found at i:843 original size:9 final size:9

Alignment explanation


    Indices: 829--858  Score: 51
    Period size: 9  Copynumber: 3.2  Consensus size: 9

        819 ATTTAATTGG

                     
        829 AAGAAAAAA
          1 AAGAAAAAA

                     
        838 AAGAAAAAA
          1 AAGAAAAAA

                      
        847 AAGAGAAAAA
          1 AAGA-AAAAA

              
        857 AA
          1 AA

        859 TTAGGAGCCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   9   13  0.65
  10    7  0.35

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (9 bp):   
AAGAAAAAA
Done.