Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001065.1 Corchorus olitorius cultivar O-4 contig01065, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1346
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24


Found at i:462 original size:4 final size:4

Alignment explanation


    Indices: 455--500  Score: 92
    Period size: 4  Copynumber: 11.5  Consensus size: 4

        445 AAAAAAACAA

                                                                     
        455 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AA
          1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AA

        501 GCCCATAAGA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   42  1.00

ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00


Consensus pattern (4 bp):   
AAAC

Done.