Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010650.1 Corchorus olitorius cultivar O-4 contig10682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34


Found at i:643 original size:24 final size:23

Alignment explanation


    Indices: 577--646  Score: 77
    Period size: 24  Copynumber: 2.9  Consensus size: 23

        567 CTGGGCCATG

                     *            *  
        577 GCTGGCCCGTGCCCTAGGCCTGTGC
          1 GCTGGCCCGCG-CC-AGGCCTGGGC

                         *         
        602 GCTGGCCCGCGCCTGGCCTGGGC
          1 GCTGGCCCGCGCCAGGCCTGGGC

                  *               
        625 GCTTGGGCCGCGCCAGGCCTGG
          1 GC-TGGCCCGCGCCAGGCCTGG

        647 CCCAAGTGGC


Statistics
Matches: 39,  Mismatches: 5, Indels: 3
        0.83            0.11        0.06

Matches are distributed among these distances:
  23   10  0.26
  24   19  0.49
  25   10  0.26

ACGTcount: A:0.03, C:0.40, G:0.41, T:0.16


Consensus pattern (23 bp):   
GCTGGCCCGCGCCAGGCCTGGGC

Found at i:1572 original size:3 final size:3

Alignment explanation


    Indices: 1558--1594  Score: 56
    Period size: 3  Copynumber: 12.3  Consensus size: 3

       1548 CCGGCTACCT

                  *                             *            
       1558 GAA GAT GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03


Consensus pattern (3 bp):   
GAA

Done.