Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010657.1 Corchorus olitorius cultivar O-4 contig10689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2483
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:874 original size:3 final size:3

Alignment explanation


    Indices: 866--896  Score: 62
    Period size: 3  Copynumber: 10.3  Consensus size: 3

        856 CCTTCTACTT

                                                     
        866 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T
          1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T

        897 TCTTCTTCTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35


Consensus pattern (3 bp):   
TAC

Done.