Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010660.1 Corchorus olitorius cultivar O-4 contig10692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4667
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32


Found at i:654 original size:42 final size:44

Alignment explanation


    Indices: 569--657  Score: 128
    Period size: 42  Copynumber: 2.0  Consensus size: 44

        559 CTAGAGTAAT

                                     *           *        
        569 CAATATATGACACTTTTGTTGACTTCCTTAATCAAATTTCTTCATC
          1 CAATATATGACACTTTTGTTGA--TACTTAATCAAATCTCTTCATC

                                                        
        615 CAATATATGACACTTTTGTT-A-ACTTAATCAAATCTCTTCATC
          1 CAATATATGACACTTTTGTTGATACTTAATCAAATCTCTTCATC

             
        657 C
          1 C

        658 TATCCTTTAC


Statistics
Matches: 41,  Mismatches: 2, Indels: 4
        0.87            0.04        0.09

Matches are distributed among these distances:
  42   20  0.49
  45    1  0.02
  46   20  0.49

ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42


Consensus pattern (44 bp):   
CAATATATGACACTTTTGTTGATACTTAATCAAATCTCTTCATC
Done.