Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010663.1 Corchorus olitorius cultivar O-4 contig10695, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 997

Length: 1662
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28


Found at i:64 original size:15 final size:16

Alignment explanation


    Indices: 44--83  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

         34 AGAGGTTGAA

                            
         44 AGAAAACAATTAAAC-
          1 AGAAAACAATTAAACT

                        *   
         59 AGAAAACAATTATACT
          1 AGAAAACAATTAAACT

                     
         75 AGAAAACAA
          1 AGAAAACAA

         84 AACAGAGTAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.65, C:0.12, G:0.07, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.