Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010665.1 Corchorus olitorius cultivar O-4 contig10697, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3945
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36


Found at i:2110 original size:32 final size:32

Alignment explanation


    Indices: 2061--2132  Score: 112
    Period size: 32  Copynumber: 2.3  Consensus size: 32

       2051 GGTGCATTTG

                                             
       2061 GGTCAGG-TTTTTCGGGTTCTGA-TCAATTTCA
          1 GGTCAGGTTTTTTCGGGTTC-GAGTCAATTTCA

                         *                  
       2092 GGTCAGGTTTTTTTGGGTTCGAGTCAATTTCA
          1 GGTCAGGTTTTTTCGGGTTCGAGTCAATTTCA

                     
       2124 GGTCAGGTT
          1 GGTCAGGTT

       2133 AATTCAGGTT


Statistics
Matches: 38,  Mismatches: 1, Indels: 3
        0.90            0.02        0.07

Matches are distributed among these distances:
  31    9  0.24
  32   29  0.76

ACGTcount: A:0.15, C:0.14, G:0.29, T:0.42


Consensus pattern (32 bp):   
GGTCAGGTTTTTTCGGGTTCGAGTCAATTTCA
Done.