Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010670.1 Corchorus olitorius cultivar O-4 contig10702, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6720
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31


Found at i:6436 original size:37 final size:37

Alignment explanation


    Indices: 6386--6460  Score: 98
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       6376 CGGGATGTAT

                            *                     
       6386 TTACAACAATTACAAGGATCAAG-GAATTACAACCAAA
          1 TTACAACAATTACAAGAATCAAGAGAATTACAA-CAAA

                  *       *           *          
       6423 TTACAATAATTACATGAATCAAGAGATTTACAACAAA
          1 TTACAACAATTACAAGAATCAAGAGAATTACAACAAA

             
       6460 T
          1 T

       6461 CAAGGAAGCC


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  37   25  0.76
  38    8  0.24

ACGTcount: A:0.51, C:0.16, G:0.09, T:0.24


Consensus pattern (37 bp):   
TTACAACAATTACAAGAATCAAGAGAATTACAACAAA
Done.