Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010672.1 Corchorus olitorius cultivar O-4 contig10704, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101706

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17419--17446
3
9.3
3
100
0
56
67
0
32
0
0.91
21690--21722
17
2.0
17
88
5
50
42
12
6
39
1.67
28130--28321
95
2.0
95
100
0
384
29
11
14
44
1.81
28579--28610
14
2.3
14
94
0
55
21
9
0
68
1.17
30530--30565
19
1.9
19
88
5
56
30
13
11
44
1.79
30556--30637
34
2.3
34
81
8
92
30
25
8
35
1.86
30967--31027
21
3.0
20
81
6
61
36
14
11
37
1.83
31063--31184
62
2.0
62
98
0
235
38
13
16
31
1.87
36030--36065
17
2.1
17
90
10
56
2
19
0
77
0.88
36046--36073
12
2.3
12
100
0
56
7
14
0
78
0.95
36361--36402
2
21.5
2
85
4
59
52
4
0
42
1.22
39005--39043
2
19.5
2
100
0
78
51
0
0
48
1.00
39423--39460
16
2.4
16
86
4
51
50
7
7
34
1.61
42857--42908
26
2.0
26
92
0
86
28
28
19
23
1.98
48898--48942
21
2.1
21
87
0
63
20
35
6
37
1.79
50245--50394
31
4.9
31
82
0
167
37
26
19
17
1.93
63389--63439
18
2.8
18
93
0
84
25
33
21
19
1.97
63407--63524
52
2.3
51
86
1
173
26
29
22
21
1.99
69735--69767
16
2.1
16
100
0
66
33
12
36
18
1.88
73373--73534
33
5.0
33
92
4
258
16
30
15
38
1.89
73390--73524
63
2.1
63
95
0
243
16
31
14
37
1.89
79366--79395
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83633--83684
17
2.6
22
66
30
53
65
5
3
25
1.32
86179--86224
17
2.7
16
83
12
56
43
0
2
54
1.12
86463--90374
329
11.8
325
71
15
1590
32
14
15
37
1.87
88765--90340
337
4.8
328
74
12
1068
32
14
14
38
1.87
99085--101696
335
7.8
332
89
4
3815
32
15
14
38
1.87
99085--101696
666
3.9
668
90
3
3992
32
15
14
38
1.87

Tables:   1

The End!