Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010673.1 Corchorus olitorius cultivar O-4 contig10705, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4325
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22


Found at i:4144 original size:77 final size:77

Alignment explanation


    Indices: 4013--4324  Score: 328
    Period size: 78  Copynumber: 4.0  Consensus size: 77

       4003 AGAAATTCTG

                                    *         *    *           *        *    
       4013 AAATAAAT-ACAACGAACGTCTCCCTCGAGACC-ATTCTGTCACAACGGCCAAACACCGACATTG
          1 AAATAAATGA-AACGAACGTCTCCATCGAGACCGTTTC-ATCACAACGGCCGAACACCGAAATTG

                          
       4076 GTGTCCCCGTATAA
         64 GTGTCCCCGTATAA

                                    **           *                     *  *  
       4090 AAATAAAT-ACAACGAACGTCTCCCCCGAGACCGTTTAATCACAACGGCCGAACACCGACATCGG
          1 AAATAAATGA-AACGAACGTCTCCATCGAGACCGTTTCATCACAACGGCCGAACACCGAAATTGG

                   *      
       4154 TGTCCCCATA-AGA
         65 TGTCCCCGTATA-A

                             *     *      *                      *   *       
       4167 AAATAAATGAAACGACAAGTCTCTATCGAGGCCGTTTCATCACAACGGCCGAAAACCAAAATTGG
          1 AAATAAATGAAACGA-ACGTCTCCATCGAGACCGTTTCATCACAACGGCCGAACACCGAAATTGG

                         
       4232 TGTCCCCGTATAA
         65 TGTCCCCGTATAA

               *  *         *      *                        **               
       4245 GAACTAGATGAAACGACCGTCTCTATCGAGACCGTTTCATCACAACGGTAGAACACC-AAAGTTG
          1 -AAATAAATGAAACGAACGTCTCCATCGAGACCGTTTCATCACAACGGCCGAACACCGAAA-TTG

                          
       4309 GTGTCCCCGTATAA
         64 GTGTCCCCGTATAA

              
       4323 AA
          1 AA

       4325 C


Statistics
Matches: 202,  Mismatches: 26, Indels: 14
        0.83            0.11        0.06

Matches are distributed among these distances:
  76    1  0.00
  77   83  0.41
  78  104  0.51
  79   14  0.07

ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19


Consensus pattern (77 bp):   
AAATAAATGAAACGAACGTCTCCATCGAGACCGTTTCATCACAACGGCCGAACACCGAAATTGGT
GTCCCCGTATAA

Done.