Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010676.1 Corchorus olitorius cultivar O-4 contig10708, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 866

Length: 1444
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29


Found at i:758 original size:21 final size:21

Alignment explanation


    Indices: 734--846  Score: 149
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        724 CTTAGGCATT

                         *       
        734 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        755 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *          * 
        776 TCCAATGAACTTGGAACCTGC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        797 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    *             
        818 TCCAATGATCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        839 TCCAATGA
          1 TCCAATGA

        847 ACTTCTAGCA


Statistics
Matches: 84,  Mismatches: 7, Indels: 2
        0.90            0.08        0.02

Matches are distributed among these distances:
  20    2  0.02
  21   82  0.98

ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.