Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001068.1 Corchorus olitorius cultivar O-4 contig01068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 755

Length: 1259
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:1064 original size:22 final size:22

Alignment explanation


    Indices: 1015--1065  Score: 59
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       1005 AAATATTACC

                             **   
       1015 ATAATTATTTTTGACAGCCATA
          1 ATAATTATTTTTGACAGAAATA

                         *         
       1037 ATAATTATTTTTGCCAAGAAATA
          1 ATAATTATTTTTGAC-AGAAATA

                   
       1060 A-AATTA
          1 ATAATTA

       1066 GGGAATAATT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  22   19  0.76
  23    6  0.24

ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39


Consensus pattern (22 bp):   
ATAATTATTTTTGACAGAAATA
Done.