Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010680.1 Corchorus olitorius cultivar O-4 contig10712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8679
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:914 original size:31 final size:31

Alignment explanation


    Indices: 856--916  Score: 77
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        846 CACAAGTCGT

                          *      **        
        856 AACGTTATATCCTGGATTGCATTTTTTGCCA
          1 AACGTTATATCCTGAATTGCACATTTTGCCA

                       *        *         
        887 AACGTTATATCTTGAATTGCGCATTTTGCC
          1 AACGTTATATCCTGAATTGCACATTTTGCC

        917 GTGAATATGC


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  31   25  1.00

ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41


Consensus pattern (31 bp):   
AACGTTATATCCTGAATTGCACATTTTGCCA
Done.