Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010686.1 Corchorus olitorius cultivar O-4 contig10718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8204
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28


Found at i:1521 original size:18 final size:18

Alignment explanation


    Indices: 1498--1534  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1488 TACTATCGAT

                              
       1498 ATATTTGCTAGCATAGAA
          1 ATATTTGCTAGCATAGAA

                              
       1516 ATATTTGCTAGCATAGAA
          1 ATATTTGCTAGCATAGAA

             
       1534 A
          1 A

       1535 AACAAGCACT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32


Consensus pattern (18 bp):   
ATATTTGCTAGCATAGAA
Done.