Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010695.1 Corchorus olitorius cultivar O-4 contig10727, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3312
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:714 original size:51 final size:51

Alignment explanation


    Indices: 655--802  Score: 296
    Period size: 51  Copynumber: 2.9  Consensus size: 51

        645 CAATAGAAGG

                                                               
        655 TTCATAGAAGGTTCTATTAATTCAATAACCTTCGGACAATTTACTGATGAT
          1 TTCATAGAAGGTTCTATTAATTCAATAACCTTCGGACAATTTACTGATGAT

                                                               
        706 TTCATAGAAGGTTCTATTAATTCAATAACCTTCGGACAATTTACTGATGAT
          1 TTCATAGAAGGTTCTATTAATTCAATAACCTTCGGACAATTTACTGATGAT

                                                          
        757 TTCATAGAAGGTTCTATTAATTCAATAACCTTCGGACAATTTACTG
          1 TTCATAGAAGGTTCTATTAATTCAATAACCTTCGGACAATTTACTG

        803 TAAACTTGCA


Statistics
Matches: 97,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   97  1.00

ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37


Consensus pattern (51 bp):   
TTCATAGAAGGTTCTATTAATTCAATAACCTTCGGACAATTTACTGATGAT
Done.