Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010696.1 Corchorus olitorius cultivar O-4 contig10728, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3898
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27


Found at i:894 original size:16 final size:16

Alignment explanation


    Indices: 875--906  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        865 GCTCTACAAG

                      *     
        875 GCAGAAAAGCTCTGAA
          1 GCAGAAAAGCCCTGAA

                            
        891 GCAGAAAAGCCCTGAA
          1 GCAGAAAAGCCCTGAA

        907 AAATCAAGAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.44, C:0.22, G:0.25, T:0.09


Consensus pattern (16 bp):   
GCAGAAAAGCCCTGAA

Found at i:1881 original size:33 final size:33

Alignment explanation


    Indices: 1833--1896  Score: 92
    Period size: 33  Copynumber: 1.9  Consensus size: 33

       1823 GCATCCGATC

                      *      *    *          
       1833 AGCAAAAGGTTAGTGAGTTGATTAATCCAAGTT
          1 AGCAAAAGGTCAGTGAGATGATCAATCCAAGTT

                   *                       
       1866 AGCAAAATGTCAGTGAGATGATCAATCCAAG
          1 AGCAAAAGGTCAGTGAGATGATCAATCCAAG

       1897 CCAGCTGAAG


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  33   27  1.00

ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25


Consensus pattern (33 bp):   
AGCAAAAGGTCAGTGAGATGATCAATCCAAGTT
Done.