Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010697.1 Corchorus olitorius cultivar O-4 contig10729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36199

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6716--6755
15
2.6
16
88
4
55
62
12
10
15
1.54
15719--16193
137
3.5
135
84
6
495
39
13
10
36
1.79
15984--16184
67
3.0
67
64
14
153
40
13
9
36
1.77
15829--16193
137
2.7
134
86
7
497
40
13
9
35
1.78
16300--16427
41
3.3
41
63
30
98
36
12
12
38
1.81
16295--16440
75
1.9
75
94
0
256
39
12
12
36
1.81
16306--16470
75
2.2
75
84
4
217
40
13
12
33
1.82
19113--19314
101
2.0
101
87
3
291
40
16
11
30
1.85
23057--23146
41
2.2
41
82
7
103
53
13
8
24
1.68
25205--25304
27
3.7
27
93
0
155
36
25
19
20
1.95
25802--26139
30
11.1
30
85
3
381
46
18
16
18
1.84
26211--26252
20
2.1
20
90
0
66
28
23
23
23
2.00
26217--26737
169
3.1
170
86
1
715
32
16
22
29
1.95
26556--26632
22
3.4
22
68
16
66
22
18
29
29
1.97
26873--27304
69
6.3
69
88
1
618
29
14
27
28
1.95
32697--32739
16
2.8
16
89
10
63
11
4
13
69
1.33
35767--35818
21
2.5
21
83
0
59
17
46
21
15
1.84

Tables:   1

The End!