Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010699.1 Corchorus olitorius cultivar O-4 contig10731, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4964
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30


Found at i:596 original size:19 final size:19

Alignment explanation


    Indices: 572--614  Score: 79
    Period size: 19  Copynumber: 2.3  Consensus size: 19

        562 GCGGGCTAAC

                               
        572 TCTTCTTTCAACCGCTGAA
          1 TCTTCTTTCAACCGCTGAA

                               
        591 TCTTCTTTCAACCGCTGAA
          1 TCTTCTTTCAACCGCTGAA

                  
        610 T-TTCT
          1 TCTTCT

        615 GCAGTTGGAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  18    4  0.17
  19   20  0.83

ACGTcount: A:0.19, C:0.30, G:0.09, T:0.42


Consensus pattern (19 bp):   
TCTTCTTTCAACCGCTGAA
Done.