Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010702.1 Corchorus olitorius cultivar O-4 contig10734, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14888
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:4993 original size:21 final size:19

Alignment explanation


    Indices: 4969--5026  Score: 80
    Period size: 19  Copynumber: 2.9  Consensus size: 19

       4959 GCTGTTCTAA

                                 
       4969 TAATCTCATCTGTACAGTACC
          1 TAATCTCATCTGTACAGT--C

                  *           *
       4990 TAATCTAATCTGTACAGTG
          1 TAATCTCATCTGTACAGTC

                              
       5009 TAATCTCATCTGTACAGT
          1 TAATCTCATCTGTACAGT

       5027 TGCTAAACAG


Statistics
Matches: 34,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  19   17  0.50
  21   17  0.50

ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36


Consensus pattern (19 bp):   
TAATCTCATCTGTACAGTC

Found at i:8468 original size:2 final size:2

Alignment explanation


    Indices: 8463--8504  Score: 75
    Period size: 2  Copynumber: 21.0  Consensus size: 2

       8453 CACACACATG

                                                 *                        
       8463 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       8505 ATTCAAAATT


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   38  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.