Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010703.1 Corchorus olitorius cultivar O-4 contig10735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2428
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26


Found at i:1606 original size:11 final size:11

Alignment explanation


    Indices: 1590--1616  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

       1580 AAATTTCGGG

                       
       1590 AAAAAAAAAGA
          1 AAAAAAAAAGA

                       
       1601 AAAAAAAAAGA
          1 AAAAAAAAAGA

                 
       1612 AAAAA
          1 AAAAA

       1617 GAGTGTCGAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00


Consensus pattern (11 bp):   
AAAAAAAAAGA
Done.