Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010706.1 Corchorus olitorius cultivar O-4 contig10738, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11560
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Found at i:7267 original size:27 final size:27

Alignment explanation


    Indices: 7220--7272  Score: 72
    Period size: 28  Copynumber: 1.9  Consensus size: 27

       7210 AAATCAATTA

                                        
       7220 GAAATCATAAAAACATAAAGATAAATCT
          1 GAAATCATAAAAACA-AAAGATAAATCT

                            *         
       7248 GAAATCATAAAATAC-CAAGATAAAT
          1 GAAATCATAAAA-ACAAAAGATAAAT

       7273 AATCAGATTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  27    9  0.39
  28   12  0.52
  29    2  0.09

ACGTcount: A:0.60, C:0.11, G:0.08, T:0.21


Consensus pattern (27 bp):   
GAAATCATAAAAACAAAAGATAAATCT
Done.