Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010713.1 Corchorus olitorius cultivar O-4 contig10745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8631
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30


Found at i:7654 original size:68 final size:68

Alignment explanation


    Indices: 7574--7711  Score: 267
    Period size: 68  Copynumber: 2.0  Consensus size: 68

       7564 GGCAAGGTGC

                                            *                                
       7574 TTGCTTCACTAAATGCATTATCTTCATCCGAGCCCTCATGTTTGAGAGTATGGGACACTCCCGTG
          1 TTGCTTCACTAAATGCATTATCTTCATCCGAGACCTCATGTTTGAGAGTATGGGACACTCCCGTG

               
       7639 TCA
         66 TCA

                                                                             
       7642 TTGCTTCACTAAATGCATTATCTTCATCCGAGACCTCATGTTTGAGAGTATGGGACACTCCCGTG
          1 TTGCTTCACTAAATGCATTATCTTCATCCGAGACCTCATGTTTGAGAGTATGGGACACTCCCGTG

               
       7707 TCA
         66 TCA

              
       7710 TT
          1 TT

       7712 CTCCCCCGGT


Statistics
Matches: 69,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  68   69  1.00

ACGTcount: A:0.22, C:0.25, G:0.19, T:0.33


Consensus pattern (68 bp):   
TTGCTTCACTAAATGCATTATCTTCATCCGAGACCTCATGTTTGAGAGTATGGGACACTCCCGTG
TCA
Done.