Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010716.1 Corchorus olitorius cultivar O-4 contig10748, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32990

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1178--1208
16
1.9
16
93
0
53
64
0
35
0
0.94
2639--2818
46
3.8
46
85
4
227
20
30
16
32
1.95
2639--2814
96
1.9
95
84
7
243
20
31
16
31
1.95
2867--2982
40
2.9
40
82
8
146
13
27
20
37
1.91
2954--3158
40
4.6
47
73
16
163
16
26
20
37
1.93
2914--3158
88
2.8
88
80
4
298
16
26
19
37
1.93
5059--5098
17
2.4
16
87
8
53
87
5
7
0
0.66
5871--6116
46
5.4
46
92
1
374
27
7
0
64
1.26
5886--6084
19
10.3
19
68
20
76
28
7
0
64
1.23
5921--6123
23
9.4
19
69
22
84
27
6
0
65
1.23
6131--6189
24
2.5
24
91
5
93
23
20
1
54
1.54
6131--6197
24
2.8
24
79
4
73
22
17
1
58
1.47
10811--10860
21
2.4
21
86
0
64
10
24
48
18
1.78
14095--14138
23
1.9
23
90
0
70
75
13
4
6
1.17
17655--17804
70
2.1
70
89
4
223
25
27
19
28
1.99
19867--19899
16
2.1
16
94
0
57
66
0
33
0
0.92
21329--21508
46
3.8
46
87
4
236
20
28
17
33
1.95
21329--21504
96
1.9
95
84
7
243
20
29
17
32
1.95
21558--21769
41
5.2
41
77
7
234
14
26
19
38
1.91
21559--21969
41
9.8
40
71
16
212
16
28
19
35
1.94
21555--21757
81
2.5
82
88
2
302
14
27
20
37
1.91
21778--22185
40
9.7
41
73
15
280
17
27
19
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21935--22086
48
3.4
45
72
22
129
15
26
18
38
1.91
21808--22145
88
3.9
88
79
5
319
17
27
19
35
1.94
27086--27167
32
2.6
31
90
7
123
50
10
18
20
1.77
28967--29001
14
2.3
16
90
9
56
25
0
37
37
1.57

Tables:   1

The End!