Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010717.1 Corchorus olitorius cultivar O-4 contig10749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904
Length: 1507
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Found at i:282 original size:155 final size:154
Alignment explanation
Indices: 1--444 Score: 752
Period size: 154 Copynumber: 2.9 Consensus size: 154
*
1 TTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCCTTCCA-TGTTTATGGCCTAACTATA
1 TTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATA
65 ATCATTTTGGTAAGATTAGTCCACTTTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
66 ATCATTTTGGTAAGATTAGTCCACTTTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
*
130 CCTATC-AGGGCCCATTAGTTCCGTT
131 CCTATCGA-GGACCATTAGTTCCG-T
*
155 TTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATA
1 TTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATA
* *
220 ATCATTTTGG-AGAGATTAGTCCACTGTGAAGTTTTTAGCTCACTTGGAACACTTGTTATTTTGG
66 ATCATTTTGGTA-AGATTAGTCCACTTTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGG
*
284 GCATATCGAGGACCATTAGTTCCGT
130 GCCTATCGAGGACCATTAGTTCCGT
309 TTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATA
1 TTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATA
*
374 ATCATTTTGGTAAGATTAGTCCACTTTGAAGTTTTTTTG-TCATTTGGAACACTTGTTATTTTGG
66 ATCATTTTGGTAAGATTAGTCCACTTTGAAG-TTTTTAGCTCATTTGGAACACTTGTTATTTTGG
*
438 TCCTATC
130 GCCTATC
445 TGATACGAAT
Statistics
Matches: 273, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
154 166 0.61
155 106 0.39
156 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.42
Consensus pattern (154 bp):
TTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATA
ATCATTTTGGTAAGATTAGTCCACTTTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
CCTATCGAGGACCATTAGTTCCGT
Done.