Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010722.1 Corchorus olitorius cultivar O-4 contig10754, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1792
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32


Found at i:1717 original size:19 final size:19

Alignment explanation


    Indices: 1693--1733  Score: 64
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       1683 ATTTGATTGA

                   *           
       1693 TTTGATTTATTATCTCGGT
          1 TTTGATTGATTATCTCGGT

                           *   
       1712 TTTGATTGATTATCTTGGT
          1 TTTGATTGATTATCTCGGT

               
       1731 TTT
          1 TTT

       1734 ACTATGATCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.15, C:0.07, G:0.17, T:0.61


Consensus pattern (19 bp):   
TTTGATTGATTATCTCGGT
Done.