Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010723.1 Corchorus olitorius cultivar O-4 contig10755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6262
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26


Found at i:5621 original size:53 final size:52

Alignment explanation


    Indices: 5523--5623  Score: 123
    Period size: 53  Copynumber: 1.9  Consensus size: 52

       5513 ACAATCCAAT

                                         *         *            
       5523 AAATAATATAAGCAAAACTAAGCAAGATGTTAACATCAACTAATCAATAACA
          1 AAATAATATAAGCAAAACTAAGCAAGATGCTAACATCAAATAATCAATAACA

                      *       *        *      *               
       5575 AAATAAGTATGAGCAAAATTAAGCAAGGTGCTAATAT-AAATAAATCAAT
          1 AAATAA-TATAAGCAAAACTAAGCAAGATGCTAACATCAAAT-AATCAAT

       5624 TTATCAAACA


Statistics
Matches: 41,  Mismatches: 6, Indels: 3
        0.82            0.12        0.06

Matches are distributed among these distances:
  52    9  0.22
  53   32  0.78

ACGTcount: A:0.54, C:0.12, G:0.11, T:0.23


Consensus pattern (52 bp):   
AAATAATATAAGCAAAACTAAGCAAGATGCTAACATCAAATAATCAATAACA
Done.