Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010725.1 Corchorus olitorius cultivar O-4 contig10757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5083
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35


Found at i:406 original size:21 final size:21

Alignment explanation


    Indices: 367--409  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        357 GGAGTTGCCT

                       *  *      
        367 AAGATGCCATTTGATCCAATG
          1 AAGATGCCATTAGACCCAATG

                         *       
        388 AAGATGCCATTAGGCCCAATG
          1 AAGATGCCATTAGACCCAATG

             
        409 A
          1 A

        410 CAAGGGCAAG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23


Consensus pattern (21 bp):   
AAGATGCCATTAGACCCAATG
Done.