Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010732.1 Corchorus olitorius cultivar O-4 contig10764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4557
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:2828 original size:21 final size:21

Alignment explanation


    Indices: 2802--2841  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       2792 CACCTAGATT

                     **          
       2802 TTACATGGTTCACCACATGCC
          1 TTACATGGTGAACCACATGCC

                               
       2823 TTACATGGTGAACCACATG
          1 TTACATGGTGAACCACATG

       2842 TGATCTTTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28


Consensus pattern (21 bp):   
TTACATGGTGAACCACATGCC

Found at i:3997 original size:16 final size:15

Alignment explanation


    Indices: 3957--3998  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       3947 ACAGAGATTG

                   *       
       3957 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

               *           
       3972 ACATAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       3987 ACTAGAAAACAA
          1 AC-AGAAAACAA

       3999 AGCAGAGTAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  15   15  0.65
  16    8  0.35

ACGTcount: A:0.64, C:0.14, G:0.07, T:0.14


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.